Training in Quarantine – Day 126

High 20s again today. Went into the office to pick up my phone charger which I left there when I went into the office last time. Even at 5am, the temperature was reading 22degC. Comfortable to walk in at that time since the sun hadn’t come out yet, but the Victoria Line was still baking hot and the stations were pretty dead…

Came back and did my walk around lunchtime, the temperature at that time was around 28degC and my shorts were getting soaked with sweat so I had to change them when I got home.

The “Snowball” Effect In Kubernetes

So, a weird thing occurred in Kubernetes on the GKE cluster we have at the office. I figured I would do a write up here, before I forget everything and maybe allow the Kubernetes devs to read over this as an issue (https://github.com/kubernetes/kubernetes/issues/93783)

We noticed some weirdness occurring on our cluster when Jobs and CronJobs started behaving strangely.

Jobs were spawning but seemed to not spawn any pods to go with it, even over an hour later, they were sitting there without a pod to go with it.

Investigating other jobs, I found a crazy large number of pods in one of our namespaces, over 900 to be exact. These pods were all completed pods from a CronJob.

The CronJob was scheduled to run every minute, and the definition of the CronJob had valid values for the history — sensible values for .spec.successfulJobsHistoryLimit and .spec.failedJobsHistoryLimit were set. And even if they weren’t, the defaults would (or should) be used.

So why did we have over 900 cron pods, and why weren’t they being cleaned up upon completion?

Just in case the number of pods were causing problems, I cleared out the completed pods:

kubectl delete pods -n {namespace} $(kubectl get pods -n {namespace} | grep Completed | awk '{print $1}' | xargs)

But even after that, new jobs weren’t spawning pods. And in fact, more CronJob pods were appearing in this namespace. So I disabled the CronJob

kubectl patch cronjobs -n {namespace} {cronjob-name} -p '{"spec" : {"suspend" : true }}'

But that also didn’t help, pods were still being generated. Which is weird — why is a CronJob still spawning pods even when it’s suspended?

So then I remembered that CronJobs actually generate Job objects. So I checked the Job objects and found over 3000 Job objects. Okay, something is seriously wrong here, there shouldn’t be 3000 Job objects for something that only runs once a minute.

So I went and deleted all the CronJob related Job objects:

kubectl delete job -n {namespace} $(kubectl get jobs -n {namespace} | grep {cronjob-name} | awk '{print $1}' | xargs)

This reduced the pods down, but did not help us determine why the Job objects were not spawning pods.

I decided to get Google onto the case and raised a support ticket.

Their first investigation brought up something interesting. They sent me this snippet from the Master logs (redacted)

2020-08-05 10:05:06.555 CEST - Job is created
2020-08-05 11:21:16.546 CEST - Pod is created
2020-08-05 11:21:16.569 CEST - Pod (XXXXXXX) is bound to node
2020-08-05 11:24:11.069 CEST - Pod is deleted

2020-08-05 12:45:47.940 CEST - Job is created
2020-08-05 12:57:22.386 CEST - Pod is created
2020-08-05 12:57:22.401 CEST - Pod (XXXXXXX) is bound to node

Spot the problem?

The time between “Job is created” and “Pod is created” around 80 minutes in the first case, and 12 minutes in the second one. That’s right, it took 80 minutes for the Pod to be spawned.

And this is where it dawned on me about what was possibly going on.

  • The CronJob spawned a Job object. It tried to spawn a pod, and that took a significant amount of time, far more than the 1 minute between runs
  • The next cycle, the CronJob looks to see if it has a running pod due to the .spec.concurrencyPolicy value.
  • The CronJob does not find a running pod so generates another Job object, which also gets stuck waiting for pod generation
  • And so on, and so on.

Each time, a new Job gets added, gets stuck waiting for pod generation for an abnormally long time, which causes another Job to be added to the namespace which also gets stuck…

Eventually, the pod will generate but by then there’s now a backlog of Jobs, meaning even if I suspended the CronJob, it won’t have any effect until the Jobs in the backlog are cleared or deleted (I had deleted them).

Google investigated further, and found the culprit:

Failed calling webhook, failing open www.up9.com: failed calling webhook "www.up9.com": Post https://up9-sidecar-injector-prod.up9.svc:443/mutate?timeout=30s: net/http: request canceled while waiting for connection (Client.Timeout exceeded while awaiting headers)

We were testing up9 and this was using a webhook, so it looks like a misbehaving webhook was causing this problem. We removed the webhook and everything started working again.

So where does this leave us? Well, a few thoughts:

  • A misbehaving/misconfigured webhook can cause a Snowball effect in the cluster causing multiple runs of a single CronJob without cleanup — successfulJobsHistoryLimit and failedJobsHistoryLimit values are seemingly ignored.
  • This could break systems where the CronJob is supposed to be run mutually exclusively, since the delay in pod generation could allow two cron pods to spawn together, even though the CronJob has a concurrencyPolicy set as Forbid.
  • If someone managed (whether intentionally or maliciously) to install a webhook that causes this pod spawning delay, and then adds a CronJob that runs once a minute — and then maliciously crafts the job to never finish, this snowball effect will cause the cluster to run out of resource and/or scale up nodes forever or until it hits the max allowed by your configuration.

Training in Quarantine – Day 123

20degC so cooler than it’s been for a while. Nice comfortable walk, but as I was walking past Sainsbury’s there seemed to be some kind of argument going on, and escalating. Didn’t hang around, but possible that this could get to a punch-up level. And it wouldn’t surprise me, Covid has certainly brought out the stupidity in people.

Training in Quarantine – Day 122

Cooler day, still warm, but not overly hot and no rain.

But my walk was a bit distracted by this little guy:

He was abnormally tame, and didn’t run off when I approached and seemed happy to look at me and even lay down. One of the residents told me they sometimes fed him. Probably wasn’t a good idea since he now sees humans as a food source.

Training in Quarantine – Day 120

Boy, oh boy, yesterday was a crazy hot day. I went back into the office as they are going to do a deep clean so we needed to make sure all our desks are clear of any personal belongings.

They blocked out every other desk:

And the air conditioning was reduced since there weren’t that many people in the office.

The temperature in the office was a toasty 26.8degC

But the temperature outside soared to 36degC, and nearly tipped the 38degC/100degF mark.

As expected, the heat destroyed Network Rail’s ability to run a reliable service and services out of King’s Cross were delayed or cancelled.

I ended up using the Piccadilly Line to get back home.

On the way, spotted Blackfriars station had a vending machine for alcohold wipes, hand sanitisers and face masks:

The heat in the trains was horrendous. Eventually made it home and decided not to walk, I was sweating enough as it was just taking the train.

Back to today. Temperatures are back to mid-20s so walking is still hot weather, but not as uncomfortable as yesterday.

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